Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs148685493 chr5:149864258 C/T 1.77E-8 117 41.77 35.13 12.63 KM Plot
THYM rs148804775 chr1:26841838 AC/A 0.00015 116 46.6 30.03 25.92 KM Plot
THYM rs148910097 chr4:70081159 G/A 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs149012100 chr3:118944744 CTATA/C 5.55E-13 119 46.27 30.13 3.83 KM Plot
THYM rs149033209 chr7:29722484 A/T 1.1E-12 115 38.13 46.27 6 KM Plot
THYM rs149037197 chr4:70042519 G/A 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs149049916 chr11:125580050 T/TATC 0.000188 119 44.38 35.67 23.42 KM Plot
THYM rs149179571 chr9:97198792 T/G 8.1E-5 119 40.67 44.3 17.03 KM Plot
THYM rs1491980 chr3:151045661 G/C 0.00022 119 21.57 50.13 38.23 KM Plot
THYM rs1491981 chr3:151040834 C/T 0.000227 119 21.57 49.87 38.33 KM Plot
THYM rs149267927 chr4:70099234 C/A 4.7E-13 119 41.77 35 6 KM Plot
THYM rs149287525 chr14:40230589 C/CGAACA 4.0E-6 119 41.22 42.73 23.63 KM Plot
THYM rs149346537 chr4:76408094 C/CA 1.11E-5 117 38.58 40.67 39.55 KM Plot
THYM rs149422502 chr2:30825519 CT/C 1.7E-8 118 36.4 50.07 33.13 KM Plot
THYM rs149440668 chr10:35495188 AT/A 4.46E-7 118 38.33 49.4 9.1 KM Plot